Program

16th
Mon
17th
Tue
18th
Wed
19th
Thu
20th
Fri
Registration
Symposium
Reception
Hackathon Hackathon
Excursion
Social Dinner
Hackathon Hackathon
G. Wrap-up

16 (Mon) - Symposium (DDBJ)

09:30 - 10:00 | Registration
10:00 - 10:05 | Opening remarks
| Kousaku Okubo
10:05 - 10:15 | Introduction to BLAH2 
| Jin-Dong Kim
10:15 - 11:05 | Biomedical semantic technologies: from the bench to the bedside Keynote
| Dietrich Rebholz-Schuhmann
11:05 - 11:15 | Deriving Linked Annotations from Corpora
| Mariana Neves
11:15 - 11:30 | Coffee Break
11:30 - 12:20 | Natural Language Processing and Semantic Annotation of Biomedical Scientific Literature
| for Knowledge Network Discovery Keynote
| Cathy Wu
12:20 - 12:30 | The SPECIES-800 corpus
| Evangelos Pafilis and Lars Juhl Jensen
12:30 - 13:30 | Lunch
13:30 - 14:20 | From Text to Knowledge Base and back: issues and challenges in Life Sciences Keynote
| Claire Nédellec
14:20 - 14:30 | Lannbridge: transparent interoperability for Linked Annotations
| Sampo Pyysalo
14:30 - 14:40 | Real-time tagging of biomedical entities
| Evangelos Pafilis and Lars Juhl Jensen
14:40 - 14:50 | Making tagtog interoperate with PubAnnotation
| Juan Miguel Cejuela and Jorge Campos
14:50 - 15:00 | BioTate, an annotation framework for biomedical information
| Alexander Garcia, Olga Giraldo and Federico López Gómez
15:00 - 15:15 | Coffee Break
15:15 - 16:05 | Validating the wisdom of the crowd for pharmacovigilance: linking adverse reactions
| reported in Social Media to literature Keynote
| Graciela Gonzalez
16:05 - 16:15 | Unifying knowledge resources for named entity recognition and normalization
| Robert Leaman and Zhiyong Lu
16:15 - 16:25 | relna: corpus of Relations of Transcription Factors to Genes or Proteins
| Ashish Baghudana and Juan Miguel Cejuela
16:25 - 16:35 | A corpus of psychological diseases and their potential causes
| Fabio Rinaldi
16:35 - 16:40 | Closing
16:40 - 17:00 | Free (Organizers to clean the venue)
17:00 - 18:30 | Travel to Hotel Harvest (charter bus)
19:00 - 21:00 | Reception, Introduction to BLAH

17 (Tue) - Hackathon

09:00 - 10:00 | Talk: Context-aware Mining of Biomedical Literature,
| Clinical Narrative and Healthcare Social Media
| Goran Nenadic
10:00 - 12:00 | Introductions, Planning, Grouping
12:00 - 13:00 | Lunch
13:00 - 16:30 | Hacking
16:30 - 17:30 | Wrap-up
17:30 - 19:00 | Dinner

18 (Wed) - Hackathon

09:00 - 10:00 | Talk: From GenBank to literature and back: challenges and approaches
| linking geographic references in literature for biomedicine.
| Graciela Gonzalez
10:00 - 12:00 | Hacking
12:00 - 13:00 | Lunch
13:00 - 15:00 | Hacking
15:30 - 20:00 | Excursion and Social Dinner
| Shogetu Temple & Ito Park

19 (Thu) - Hackathon

09:00 - 10:00 | Talk: Data and text mining of Danish electronic health records
| Lars Juhl Jensen
10:00 - 12:00 | Hacking
12:00 - 13:00 | Lunch
13:00 - 16:30 | Hacking
16:30 - 17:30 | Wrap-up
17:30 - 19:00 | Dinner

20 (Fri) - Hackathon

09:00 - 12:00 | Hacking
12:00 - 13:00 | Lunch
13:00 - 15:00 | Hacking
15:00 - 17:30 | Grand Wrap-up and Discussions
17:30 - 19:30 | Discussions over Dinner

Ċ
Jin-Dong Kim,
Dec 1, 2015, 12:30 AM
Ċ
Jin-Dong Kim,
Nov 23, 2015, 7:26 AM
Ċ
Jin-Dong Kim,
Nov 23, 2015, 7:25 AM
Ċ
Jin-Dong Kim,
Dec 22, 2015, 12:36 AM
Ċ
Jin-Dong Kim,
Nov 23, 2015, 7:25 AM
Ċ
Jin-Dong Kim,
Nov 23, 2015, 7:26 AM
Ċ
Jin-Dong Kim,
Nov 23, 2015, 7:25 AM
Ċ
Jin-Dong Kim,
Nov 23, 2015, 7:25 AM
Ċ
Jin-Dong Kim,
Nov 23, 2015, 7:25 AM
Ċ
Jin-Dong Kim,
Nov 23, 2015, 7:34 AM
Ċ
Jin-Dong Kim,
Nov 23, 2015, 7:24 AM